This is the command fprotdiste that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
fprotdist - Protein distance algorithm
SYNOPSIS
fprotdist -sequence seqsetall [-ncategories integer] -rate array -categories properties
[-weights properties] -method list -gamma list -gammacoefficient float
-invarcoefficient float -aacateg list -whichcode list -ease float -ttratio float
-basefreq array -outfile outfile [-printdata boolean] [-progress boolean]
fprotdist -help
DESCRIPTION
fprotdist is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Phylogeny:Molecular sequence" command group(s).
OPTIONS
Input section
-sequence seqsetall
File containing one or more sequence alignments
-ncategories integer
Default value: 1
-rate array
-categories properties
-weights properties
Additional section
-method list
Default value: j
-gamma list
Default value: c
-gammacoefficient float
Default value: 1
-invarcoefficient float
Default value: 1
-aacateg list
Default value: G
-whichcode list
Default value: u
-ease float
Default value: 0.457
-ttratio float
Default value: 2.0
-basefreq array
Default value: 0.25 0.25 0.25 0.25
Output section
-outfile outfile
-printdata boolean
Default value: N
-progress boolean
Default value: Y
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