This is the command gbrowse_syn_load_alignment_database that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
gbrowse_syn_load_alignment_database - Script to load the database for gbrowse_syn
DESCRIPTION
The expected file format is tab-delimited (shown below):
species1 ref1 start1 end1 strand1 cigar_string1 species2 ref2 start2 end2 strand2
cigar_string2 coords1... | coords2...
the coordinate format: pos1_species1 pos1_species2 ... posn_species1 posn_species2 |
pos1_species2 pos1_species1 ... posn_species2 posn_species1,
where pos is the matching sequence coordinate (ungapped) in each species.
Use gbrowse_syn_load_alignment_database online using onworks.net services
