This is the command gt-convertseq that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
gt-convertseq - Parse and convert sequence file formats (FASTA/FASTQ, GenBank, EMBL).
SYNOPSIS
gt convertseq [options] file [...]
DESCRIPTION
-v [yes|no]
be verbose (default: no)
-r [yes|no]
reverse complement sequences (default: no)
-showfilelengthvalues [yes|no]
show filelengths (default: no)
-noseq [yes|no]
do not show sequences (default: no)
-fastawidth [value]
FASTA output line width, 0 for unlimited (default: 60)
-contractdnawc [yes|no]
replace stretches of DNA wildcards with a single N (default: no)
-contractproteinwc [yes|no]
replace stretches of protein wildcards with a single X (default: no)
-o [filename]
redirect output to specified file (default: undefined)
-gzip [yes|no]
write gzip compressed output file (default: no)
-bzip2 [yes|no]
write bzip2 compressed output file (default: no)
-force [yes|no]
force writing to output file (default: no)
-help
display help and exit
-version
display version information and exit
REPORTING BUGS
Report bugs to <[email protected]>.
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