This is the command idconvert that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
idconvert — Convert mass spectrometry identification file formats.
SYNOPSIS
idconvert [options] [filemasks]
DESCRIPTION
This manual page documents briefly the idconvert software shipped within the libpwiz-tools
package. This program allows one to convert mass spectrometry protein identification data
files from one format to another.
OPTIONS
-v | --verbose
Display detailed processing progress information.
-f | --filelist filename
Uses the contents of filename which lists filenames.
-o | --outdir dir
Set the output directory ('-' for stdout) to dir. By default, the output
directory is '.' (that is, the current working directory).
-c | --config filename
Set the configuration file to filename.
-e | --ext ext
Set the extension of the output files to ext. Can be mzid or pepXML or txt.
--mzIdentML
Write mzIdentML format (default).
--pepXML Write pepXML format.
--text Write hierarchical text format.
EXAMPLES
Convert sequest.pepXML to sequest.mzid
idconvert sequest.pepXML
Convert mascot.mzid to mascot.pepXML
idconvert mascot.mzid --pepXML
Use a configuration file
idconvert xtandem.pep.xml -c config.txt
RETURN VALUE
The number of failed files.
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