This is the command maf-convert that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
maf-convert - Convert MAF-format alignments to tabular format
DESCRIPTION
Usage:
maf-convert --help maf-convert axt mafFile(s) maf-convert blast mafFile(s)
maf-convert blasttab mafFile(s) maf-convert html mafFile(s) maf-convert psl
mafFile(s) maf-convert sam mafFile(s) maf-convert tab mafFile(s)
Read MAF-format alignments & write them in another format.
OPTIONS
-h, --help
show this help message and exit
-p, --protein
assume protein alignments, for psl match counts
-n, --noheader
omit any header lines from the output
-d, --dictionary
include dictionary of sequence lengths in sam format
-f DICTFILE, --dictfile=DICTFILE
get sequence dictionary from DICTFILE
-r READGROUP, --readgroup=READGROUP
read group info for sam format
-l LINESIZE, --linesize=LINESIZE
line length for blast and html formats (default: 60)
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