This is the command maqindex that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
maqindex - maqview indexing
SYNOPSIS
maqindex <-i|-v|-b> [-l level] [-c cns] <in.map> [chr[:begin[-end]] [...]]
OPTIONS
-l INT level for indexing [1024]
-c STR .cns file for this .map file
-i index the map file
-v display the alignment in the mapview format
-b dump in the .map format
Use maqindex online using onworks.net services