This is the command masai_indexer that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
masai_indexer - Masai Indexer
SYNOPSIS
masai_indexer [OPTIONS] <GENOME FILE>
DESCRIPTION
Masai is a fast and accurate read mapper based on approximate seeds and multiple
backtracking.
See http://www.seqan.de/projects/masai for more information.
(c) Copyright 2011-2012 by Enrico Siragusa.
-h, --help
Displays this help message.
--version
Display version information
Genome Index Options:
-x, --index STR
Select the genome index type. One of esa, sa, qgram, and fm. Default: sa.
-xp, --index-prefix STR
Specify an genome index prefix name. Default: use the genome filename prefix.
Output Options:
-t, --tmp-folder STR
Specify a huge temporary folder. Default: use the genome folder.
VERSION
masai_indexer version: 0.7.1 [14053] Last update 2013-05-16
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