mia-3disosurface-from-stack - Online in the Cloud

PROGRAM:

NAME

mia-3disosurface-from-stack - Extract an ist-surface froma a 3D image.

SYNOPSIS

mia-3disosurface-from-stack -i <in-image> -o <out-mesh> [options]

DESCRIPTION

mia-3disosurface-from-stack This program is used to extract an iso-surface from the input
gray scale image given as slices.

OPTIONS

File-IO
-i --in-image=(input, required); string
input image filename pattern

-o --out-mesh=(output, required); string
output mesh

Help & Info
-V --verbose=warning
verbosity of output, print messages of given level and higher priorities.
Supported priorities starting at lowest level are:
info ‐ Low level messages
trace ‐ Function call trace
fail ‐ Report test failures
warning ‐ Warnings
error ‐ Report errors
debug ‐ Debug output
message ‐ Normal messages
fatal ‐ Report only fatal errors

--copyright
print copyright information

-h --help
print this help

-? --usage
print a short help

--version
print the version number and exit

Image options
-s --iso-value=128
iso-value of iso surface to be extractediso-value of iso surface to be
extracted

Mesh options
-f --max-faces=-1
maximum number of Faces,maximum number of Faces,

-e --max-edges=-1
maximum number of Edgesmaximum number of Edges

-c --max-cost=0.1
maximum cost for edge collapsmaximum cost for edge collaps

-r --ratio=4
ratio of faces(edges) to target number, at which the optimization changes
from edge-length to volume-optimizedratio of faces(edges) to target number,
at which the optimization changes from edge-length to volume-optimized

-w --reverse-winding
reverse the winding of the triangles in order to make normals point away
from the high intensity area

Processing
--threads=-1
Maxiumum number of threads to use for processing,This number should be lower
or equal to the number of logical processor cores in the machine. (-1:
automatic estimation).Maxiumum number of threads to use for processing,This
number should be lower or equal to the number of logical processor cores in
the machine. (-1: automatic estimation).

EXAMPLE

Extract the surface from an image set with numbers imageXXXX.png that corresponds to the
value 30 and stop optimizing when the mesh consists of less than 100000 triangles.

mia-3disosurface-from-stack -i image0000.png -o mesh.vmesh -s 30 -f 100000

AUTHOR(s)

Gert Wollny

COPYRIGHT

This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes
with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU
GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the
option '--copyright'.

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