EnglishFrenchSpanish

OnWorks favicon

nii2mnc - Online in the Cloud

Run nii2mnc in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command nii2mnc that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


nii2mnc - convert a NIfTI-1 or Analyze 7.5 format file to a MINC format file.

SYNOPSIS


nii2mnc [<options>] <infile> <outfile.mnc>

nii2mnc -help

DESCRIPTION


The nii2mnc command is used to convert "NIfTI-1" format files to MINC format. The NIfTI-1
format was developed by the members of the Neuroinformatics Technology Initiative's Data
Format Working Group (DFWG). The NIfTI-1 format is based upon the Mayo Clinic's Analyze
7.5 format.

The name of the program is derived from the common filename suffixes used for NIfTI-1 and
MINC files. NIfTI-1 defines two possible formats, a "header plus raw image" 2-file
format, and a single-file format that includes both header information and the image data.
As with Analyze 7.5, the 2-file format consists of one file with the suffix ".hdr" and
another file with the extension ".img". In NIfTI-1 single-file format, the two files may
be combined into a single file with a ".nii" filename suffix.

OPTIONS


Note that options can be specified in abbreviated form (as long as they are unique) and
can be given anywhere on the command line.

Output voxel format


-float Save voxels in 32-bit floating point format

-double
Save voxels in 64-bit floating point format

-byte Save voxels in 8-bit integer format

-short Save voxels in 16-bit integer format

-int Save voxels in 32-bit integer format

-signed
Save voxels in signed (2's complement) integer format

-unsigned
Save voxels in unsigned integer format

Analyze 7.5 specific options


-transverse
Assume data is in ZYX dimension order.

-sagittal
Assume data is in XZY dimension order.

-coronal
Assume data is in YZX dimension order.

-xyz Assume data is in XYZ dimension order.

-zxy Assume data is in ZXY dimension order.

-yxz Assume data is in YXZ dimension order.

-flipx, -flipy, -flipz
Invert the samples along the given axis.

Other options


-noscanrange
Don't scan data to determine valid range.

-quiet Quiet operation - do not print progress or debugging information.

Generic options for all commands


-help Print summary of command-line options and abort

-version
Print the program and library versions and abort

KNOWN BUGS


Current handling of NIfTI-1 qform and sform coordinate transforms should probably be
revised as the NIfTI group clarifies the correct usage of these fields.

Use nii2mnc online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    Blackfriday
    Blackfriday
    Blackfriday is a Markdown processor
    implemented in Go. It is paranoid about
    its input (so you can safely feed it
    user-supplied data), it is fast, it
    supports c...
    Download Blackfriday
  • 2
    QNAP NAS GPL Source
    QNAP NAS GPL Source
    GPL source for QNAP Turbo NAS.
    Audience: Developers. User interface:
    Web-based. Programming Language: C,
    Java. Categories:System, Storage,
    Operating System Ker...
    Download QNAP NAS GPL Source
  • 3
    deep-clean
    deep-clean
    A Kotlin script that nukes all build
    caches from Gradle/Android projects.
    Useful when Gradle or the IDE let you
    down. The script has been tested on
    macOS, but ...
    Download deep-clean
  • 4
    Eclipse Checkstyle Plug-in
    Eclipse Checkstyle Plug-in
    The Eclipse Checkstyle plug-in
    integrates the Checkstyle Java code
    auditor into the Eclipse IDE. The
    plug-in provides real-time feedback to
    the user about viol...
    Download Eclipse Checkstyle Plug-in
  • 5
    AstrOrzPlayer
    AstrOrzPlayer
    AstrOrz Player is a free media player
    software, part based on WMP and VLC. The
    player is in a minimalist style, with
    more than ten theme colors, and can also
    b...
    Download AstrOrzPlayer
  • 6
    movistartv
    movistartv
    Kodi Movistar+ TV es un ADDON para XBMC/
    Kodi que permite disponer de un
    decodificador de los servicios IPTV de
    Movistar integrado en uno de los
    mediacenters ma...
    Download movistartv
  • More »

Linux commands

Ad