This is the command patmatdbe that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
patmatdb - Searches protein sequences with a sequence motif
SYNOPSIS
patmatdb -sequence seqall -motif string -outfile report
patmatdb -help
DESCRIPTION
patmatdb is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Protein:Motifs" command group(s).
OPTIONS
Input section
-sequence seqall
Required section
-motif string
Patterns for patmatdb are based on the format of pattern used in the PROSITE database.
For example: '[DE](2)HS{P}X(2)PX(2,4)C' means two Asps or Glus in any order followed
by His, Ser, any residue other then Pro, then two of any residue followed by Pro
followed by two to four of any residue followed by Cys. The search is
case-independent, so 'AAA' matches 'aaa'.
Output section
-outfile report
Use patmatdbe online using onworks.net services
