This is the command pepnete that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
pepnet - Draw a helical net for a protein sequence
SYNOPSIS
pepnet -sequence sequence -amphipathic toggle -squares string -diamonds string
-octags string -graph graph
pepnet -help
DESCRIPTION
pepnet is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Display,Protein:2D Structure" command group(s).
OPTIONS
Input section
-sequence sequence
Output section
-amphipathic toggle
If this is true then the residues ACFGILMVWY are marked as squares and all other
residues are unmarked. This overrides any other markup that you may have specified
using the qualifiers '-squares', '-diamonds' and '-octags'.
-squares string
By default the aliphatic residues ILVM are marked with squares. Default value: ILVM
-diamonds string
By default the residues DENQST are marked with diamonds. Default value: DENQST
-octags string
By default the positively charged residues HKR are marked with octagons. Default
value: HKR
-graph graph
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