This is the command placnet that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
placnet - Plasmid Constellation Network project
DESCRIPTION
Placnet is a new tool for plasmid analysis in NGS projects. Placnet is optimized to work
with Illumina sequences but it also works with 454, Iontorrent or any of the actual
sequence technologies.
The input of placnet is a set of contigs and one or more SAM files with the mapping of the
reads against the contigs. Placnet obtains a set of files, easily opened on Cytoscape
software or other network tools.
OPTIONS
Write inputFile Template
placnet -generate
Network process
placnet -f inputFile.txt -p prefix -l min
-f=s Input file for PLACNET analysis.
-p=s Prefix name for output files (default 'placnet').
-l=s Minimun contig length to scaffold process (default '200').
Use placnet online using onworks.net services
