This is the command polydote that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
polydot - Draw dotplots for all-against-all comparison of a sequence set
SYNOPSIS
polydot -sequences seqset -wordsize integer -gap integer [-boxit boolean]
[-dumpfeat toggle] -outfeat featout -graph graph
polydot -help
DESCRIPTION
polydot is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Alignment:Dot plots" command group(s).
OPTIONS
Input section
-sequences seqset
File containing a sequence alignment
Required section
-wordsize integer
Default value: 6
Output section
-gap integer
This specifies the size of the gap that is used to separate the individual dotplots in
the display. The size is measured in residues, as displayed in the output. Default
value: 10
-boxit boolean
Default value: Y
-dumpfeat toggle
Default value: N
-outfeat featout
-graph graph
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