pregap4 - Online in the Cloud

PROGRAM:

NAME

pregap4 - prepare raw data from sequencing instruments for usage with gap4 (part of staden
package)

DESCRIPTION

Before entry into a gap4 database the raw data from sequencing instruments needs to be
passed through several processes, such as screening for vectors, quality evaluation, and
conversion of data formats. Pregap4 is used to pass a batch of readings through these
steps in an automatic way. It provides an interface for setting up and configuring the
processing and for controlling the passage of the readings through each stage. The
separate tasks are termed "modules" and each module is typically managed by a dedicated
program. Pregap4 wraps all of these modules into a single easy to use environment, whilst
maintaining the flexibility to select and extend the processing modules. It is an, as
yet, unpublished replacement of the program pregap Bonfield, J.K. and Staden, R.
Experiment files and their application during large-scale sequencing projects. DNA
Sequence 6, 109-117 (1996).

Use pregap4 online using onworks.net services