This is the command quality_check that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
quality_check - perform a sanity check on the mapping results (SAM file)
SYNOPSIS
quality_check [Options] SAMFILE
DESCRIPTION
Perform a sanity check on the mapping results (SAM file).
This tool analyzes the output of the read mapper and provides useful information to the
user to decide whether the set of reference sequences and the mapper settings are feasible
for the given dataset.
OPTIONS
SAMFILE
Name of the SAM file to analyze
-h, --help
show this help message and exit
-o OUT, --outpath=OUT
Path to the directory for the analysis output. [default: ./]
Use quality_check online using onworks.net services