This is the command repair that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
repair - a component of subread suite
USAGE
repair [options] -i <input_file> -o <output_file>
Required arguments:
-i <string>
Name of input file. BAM format by default.
-o <string>
Name of output file. The output file is in BAM format.
Optional arguments:
-S The input file is in SAM format.
-c Compress the output BAM file. This will reduce the size of BAM file, but will
increase the time of retrieving reads from BAM file.
-T <int>
Number of CPU threads. 8 by default.
-d Do not add dummy reads for singleton reads.
-t Do not include sequences and quality scores of reads in the output file.
Use repair online using onworks.net services
