This is the command saint-spc-noctrl that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
saint-spc-noctrl - run SAINT scoring algorithm for protein-protein interaction data using
label free quantitative proteomics data
SYNOPSIS
saint-spc-noctrl [interactionFile] [preyFile] [baitFile] [nburnin] [niter] [fthres]
[fgroup] [var] [normalize]
DESCRIPTION
-burnin and iter: burn-in period and main iteration of MCMC
-fthres: frequency threshold above which probability is set to 0
-fgroup: frequency boundary dividing high and low frequency groups
-var: binary [0/1] indicator for modeling variance of the count data distributions
-normalize: whether to normalize the counts by total spectral counts
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