scftool - Online in the Cloud

PROGRAM:

NAME

scftool - provides a set of tools useful when working with SCF trace files.

SYNOPSIS

scftool <toolname> <tool parameters>

OPTIONS

Available tools:

convert
Cuts the given range out of an SCF file and makes a new SCF out of it.

To get help more specific help please type scftool convert

cut Cuts a given range of a SCF file into a new SCF file.

remix Combines trace information of a SCF file with new bases, qualities and peak values
(either in FASTA or PHD format) into a new SCF file.

EXAMPLES

Example for cut:

scftool cut infile lower_base_bound upper_base_bound outfile

Usage of remix (when using PHD files as input for bases, quals and peaks):

scftool remix scf_infile phd_infile scf_outfile

Usage of remix (when using FASTA files as input for bases, quals and peaks):

scftool remix scf_infile bases_infile quals_infile peaks_infile scf_outfile

Use scftool online using onworks.net services