This is the command sim2gff that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
sim2gff - Converts SIM file into GFF formatted records
SYNOPSIS
sim2gff [-frxyHh] sim_file > gff_file
DESCRIPTION
This manual page documents briefly the sim2gff command.
sim2gff is a program written in Perl that converts SIM file into GFF formatted records
(for use with gff2aplot and gff2javaplot).
OPTIONS
-h, --help
Show summary of options.
-f Output is written to a file named <sim_file>.gff.
-r Interchange the order of sequences (Seq1 on y-axis, Seq2 on x-axis).
-x <name>
Specify the species name for species1 (default: "Seq1").
-y <name>
Specify the species name for species2 (default: "Seq2").
-H Use the fasta file headers for species labels.
EXIT STATUS
The following perl-like exit status are returned:
0 Error
1 Successful completion
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