This is the command simpal.pl that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
simpal -- proof of concept
SYNOPSIS
simpal.pl [options] <ref seq> <target seq> [target2 target3 ...]
OPTIONS
Set options by something like --tolerance=5 or -t 5 or whatever.
maxLoop -- specifies max separation for the ends of the palindromes
maxDistance -- specifies the maximum difference in palindrome length
when comparing palindromes
tolerance -- max permissable misses in palindromes between sequences
Setting either to -1 means no limit
seedlength -- length of seeds to use for finding palindromes
Use simpal.pl online using onworks.net services
