This is the command simple that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
simple - the obvious array-based kmer counter
SYNOPSIS
simple [-f|-r|-C] [-c compression] [-m mersize] -i input -o output
DESCRIPTION
simple is a very simple mer counter. It allocates a gigantic 32-bit array, populates the
array with mers, sorts, and writes the output. It will allocate 4 bytes per kmer. k=16
will require 16 GB to run.
OPTIONS
-i input
-o output
-m mersize
the mer size. Default is 22
-f forward kmer (this is the default)
-r reverse kmer
-C canonical kmer (lexicographically smaller of the forward and reverse kmer at each
location)
-c # mer compression
Use simple online using onworks.net services