This is the command simplegraph.pl that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
simplegraph.pl - Provides dotplot/chaos style plot of murasaki alignments
SYNOPSIS
simplegraph.pl <murasaki ailgnment file> [-output=<output prefix>]
OPTIONS
murasaki alignment file The main one outputted by murasaki.
--output Prefix for output files.
--nostitch Don't draw lines for stitch file breaks.
--signed
Leave signedness alone (otherwise absolute coordinates are drawn)
--keepplot
Keep the file containing the gnuplot commands (helpful if you want to run gnuplot
interactively).
--interactive=<S>
Run gnuplot interactively for some set of sequences <S> (default all)
--order=<S> Reorder input sequences on the fly (or consider only a subset)
<S> can be specified as a simple permutation like 201 (which would mean sequence
2, then 0, then 1), or if you have more than 10 sequences you can separate digits
with any non-digit character (eg: "2,0,1").
DESCRIPTION
Draws graphs of murasaki alignments.
Use simplegraph.pl online using onworks.net services
