This is the command stretchere that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
stretcher - Needleman-Wunsch rapid global alignment of two sequences
SYNOPSIS
stretcher -asequence sequence -bsequence sequence [-datafile matrix] [-gapopen integer]
[-gapextend integer] -outfile align
stretcher -help
DESCRIPTION
stretcher is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Alignment:Global" command group(s).
OPTIONS
Input section
-asequence sequence
-bsequence sequence
-datafile matrix
This is the scoring matrix file used when comparing sequences. By default it is the
file 'EBLOSUM62' (for proteins) or the file 'EDNAFULL' (for nucleic sequences). These
files are found in the 'data' directory of the EMBOSS installation.
Additional section
-gapopen integer
Default value: @($(acdprotein)? 12 : 16)
-gapextend integer
Default value: @($(acdprotein)? 2 : 4)
Output section
-outfile align
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