This is the command subindel that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
subindel - detect short and long indels
USAGE
subindel -i <SAM file> -g <subread index> -o <output VCF> {-d <expected fragment
distance>} {-I <max indel length>} {--paired-end}
Example:
subindel -i my_paired_end_reads.SAM -g my_index -o my_result -d 300 -I 200
--paired-end
Use subindel online using onworks.net services