This is the command TransDecoder.LongOrfs that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
Transdecoder.LongOrfs - Transcriptome Protein Prediction
USAGE
Required:
-t <string> transcripts.fasta
Optional:
-m <int> minimum protein length (default: 100)
-G <string> genetic code (default: universal; see PerlDoc; options: Euplotes, Tetrahymena, Candida, Acetabularia)
-S strand-specific (only analyzes top strand)
Genetic Codes
See <http://golgi.harvard.edu/biolinks/gencode.html>. These are currently supported:
universal (default)
Euplotes
Tetrahymena
Candida
Acetabularia
Mitochondrial-Canonical
Mitochondrial-Vertebrates
Mitochondrial-Arthropods
Mitochondrial-Echinoderms
Mitochondrial-Molluscs
Mitochondrial-Ascidians
Mitochondrial-Nematodes
Mitochondrial-Platyhelminths
Mitochondrial-Yeasts
Mitochondrial-Euascomycetes
Mitochondrial-Protozoans
2015-12-28 TRANSDECODER.LONGORFS(1)
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