This is the command tree-ppuzzle that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
tree-ppuzzle - Reconstruction of phylogenetic trees by maximum likelihood (parallelized
version)
SYNOPSIS
tree-ppuzzle
DESCRIPTION
This manual page documents briefly the tree-ppuzzle command. This manual page was written
for the Debian GNU/Linux distribution because the original program does not have a manual
page.
TREE-PPUZZLE is the new name for the program previously known as PPUZZLE!
tree-puzzle is an interactive console program that implements a fast tree search
algorithm, quartet puzzling, that allows analysis of large data sets and automatically
assigns estimations of support to each internal branch. TREE-PPUZZLE also computes
pairwise maximum likelihood distances as well as branch lengths for user specified trees.
Branch lengths can also be calculated under the clock-assumption. In addition, TREE-
PPUZZLE offers a novel method, likelihood mapping, to investigate the support of a
hypothesized internal branch without computing an overall tree and to visualize the
phylogenetic content of a sequence alignment.
This program is the paralelized version of tree-puzzle.
OPTIONS
There are no options. For usage please look at /usr/share/doc/tree-puzzle/tree-puzzle.pdf.
Use tree-ppuzzle online using onworks.net services
