This is the command uc-echo that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
uc-echo - Short-read Error Correction
SYNOPSIS
uc-echo [options] read_file_name
OPTIONS
-h, --help
show this help message and exit
-o OUTPUT_FILENAME, --output=OUTPUT_FILENAME
Output file name
-l LOG_FILENAME, --log=LOG_FILENAME
Log file name
--DD=TMP_DIRECTORY, --tmp_dir=TMP_DIRECTORY
Temporary data directory
-u NCPU, --ncpu=NCPU
Number of processes used in training
-b BSIZE, --block_size=BSIZE
Split data into blocks of specified size
--nh=NHASH, --n_hash_block=NHASH
Split hash table into n tables
--rm=READ_MERGE, --read_merge_size=READ_MERGE
Merge n hash tables at a time
--hm=HASH_MERGE, --hash_merge_batch_size=HASH_MERGE
Merge n adjacency lists at a time
-k K, --kmer=K
k-mer size used for hashing
-e E, --min_error_tolerance=E
Minimum error tolerance for parameter searching
-E E, --max_error_tolerance=E
Maximum error tolerance for parameter searching
--hh=H, --min_minimum_overlap=H
Minimum minimum overlap length for parameter searching
--hH=H, --max_minimum_overlap=H
Maximum minimum overlap length for parameter searching
--h_rate=H_RATE, --heterozygous_rate=H_RATE
Rate for heterozygous site
--model_selection_size=MSIZE
Model selection data set size
--keep_all_files
Keep all temporary files. By default, temporary files are deleted automatically.
-h, --help
show this help message and exit
-o OUTPUT_FILENAME, --output=OUTPUT_FILENAME
Output file name
-l LOG_FILENAME, --log=LOG_FILENAME
Log file name
--DD=TMP_DIRECTORY, --tmp_dir=TMP_DIRECTORY
Temporary data directory
-u NCPU, --ncpu=NCPU
Number of processes used in training
-b BSIZE, --block_size=BSIZE
Split data into blocks of specified size
--nh=NHASH, --n_hash_block=NHASH
Split hash table into n tables
--rm=READ_MERGE, --read_merge_size=READ_MERGE
Merge n hash tables at a time
--hm=HASH_MERGE, --hash_merge_batch_size=HASH_MERGE
Merge n adjacency lists at a time
-k K, --kmer=K
k-mer size used for hashing
-e E, --min_error_tolerance=E
Minimum error tolerance for parameter searching
-E E, --max_error_tolerance=E
Maximum error tolerance for parameter searching
--hh=H, --min_minimum_overlap=H
Minimum minimum overlap length for parameter searching
--hH=H, --max_minimum_overlap=H
Maximum minimum overlap length for parameter searching
--h_rate=H_RATE, --heterozygous_rate=H_RATE
Rate for heterozygous site
--model_selection_size=MSIZE
Model selection data set size
--keep_all_files
Keep all temporary files. By default, temporary files are deleted automatically.
Use uc-echo online using onworks.net services
