This is the command vcf-merge that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
vcf-merge - merge the bgzipped and tabix indexed VCF files
SYNOPSIS
merge-vcf [OPTIONS] file1.vcf file2.vcf.gz ... > out.vcf
DESCRIPTION
About: Merge the bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf; tabix -p vcf
file.vcf.gz)
OPTIONS
-c, --chromosomes <list|file>
Same as -r, left for backward compatibility. Please do not use as it will be
dropped in the future.
-d, --remove-duplicates
If there should be two consecutive rows with the same chr:pos, print only the first
one.
-H, --vcf-header <file>
Use the VCF header
-h, -?, --help
This help message.
-r, --regions <list|file>
Do only the given regions (comma-separated list or one region per line in a file).
-s, --silent
Try to be a bit more silent, no warnings about duplicate lines.
Use vcf-merge online using onworks.net services