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PROGRAM:

NAME


average_images - Average images

SYNOPSIS


average_images [options] image0 ...

DESCRIPTION


This tool computes pixelwiase average, variance, standard deviation, z-score, or entropy
images from a list of user-provided intensity images.

OPTIONS


Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options
--mode
Mode of averaging operation Supported values: "avg", "var", "stdev", "zscore",
"entropy", where the default is "avg", or use one of the following:

--avg
Compute average (i.e., mean) image [This is the default]

--var
Compute variance image

--stdev
Compute standard deviation image

--zscore
Compute z-score image

--entropy
Compute pixel-by-pixel population entropy image

Data Preprocessing
--log, -l
Apply log to input data

--abs, -a
Use absolute input values

--normalize-mean-stdev, -n
Normalize image intensities using means and standard deviations

--set-padding-value <double>
Define padding value in input images [Default: disabled]

Output Options
--outfile-name <string>, -o <string>
Output file name [Default: average.nii ]

--type
Scalar data type of output image. Supported values: "float", "double", where the
default is "float", or use one of the following:

--float
Single-precision float. [This is the default]

--double
Double-precision float.

AUTHORS


Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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