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SSC download for Linux

Free download SSC Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named SSC whose latest release can be downloaded as SSC0.1.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named SSC with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

SSC


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DESCRIPTION

SSC is a tool for predicting sgRNA efficiency from spacer sequences. It supports the applications of optimizing sgRNA libraries in CRISPR/Cas9 knockout or CRISPR/dCas9 inhibition/activation screens.

Features

  • Extracting candidate spacer sequences from .fasta file
  • Predict sgRNA efficiency from the spacer sequences, for library design in CRISPR/Cas9 knockout and CRISPR/dCas9 inhibition or activation.
  • provide matrices that supports: 19-20 bps spacers in CRISPR/Cas9 knockout, optimized for human and mouse genome.
  • provide matrices that supports: 19-21 bps spacers in CRISPR/dCas9, optimized for human genome.


This is an application that can also be fetched from https://sourceforge.net/projects/spacerscoringcrispr/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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