This is the Linux app named BarraCUDA Fast Short Read Aligner whose latest release can be downloaded as barracuda_0.7.107h.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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BarraCUDA Fast Short Read Aligner
DESCRIPTION
Barracuda is a high-speed sequence aligner based on Sanger's BWA and utilizes the latest Nvidia CUDA architecture for accelerating alignments of sequence reads generated by next-generation sequencers.
Features
- Fixed problems with compiling the software in Ubuntu 16.04
- Tweak: SAMPE 8-core limit is now lifted
- FM-index sequencing read mapper software using NVIDIA CUDA acceleration
- Outputs in SAM format for downstream analyses
- Requires NVIDIA graphics card with compute capability 3.5 or above and at least 1GB VRAM
- Requires NVIDIA CUDA SDK toolkit 6.x or above and NVIDIA driver 340 or above
- BarraCUDA is published on BMC Research Notes 2012, 5:27, doi:10.1186/1756-0500-5-27
- Paper URL: http://www.biomedcentral.com/1756-0500/5/27
- This project is supported by the CUDA centre of excellence at Cambridge University
Audience
Science/Research
User interface
Command-line
Programming Language
C++, C
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/seqbarracuda/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
