This is the Linux app named lr2rmats whose latest release can be downloaded as lr2rmats-v0.1-alpha.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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lr2rmats
DESCRIPTION
lr2rmats is a Snakemake-based light-weight pipeline which is designed to utilize both third-generation long-read and second-generation short-read RNA-seq data to generate an enhanced gene annotation file. The newly generated annotation file could be provided to rMATS for differential alternative splicing analysis.
More information can be found at https://sourceforge.net/p/lr2rmats/wiki/Home/
Features
- Long read
- RNA-seq
- Alternative splicing
- Pacific Biosciences
- Oxford Nanopore Technologies
Audience
Science/Research
User interface
Command-line
Programming Language
Unix Shell, Python, C
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/lr2rmats/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
