bp_mrtransp - Online in the Cloud

PROGRAM:

NAME

bp_mrtrans - implement a transformer of alignments from protein to mrna coordinates

SYNOPSIS

Usage:
bp_mrtrans -i inputfile -o outputfile [-if input format] [-of output format] [-s cDNA
sequence database] [-sf cDNA sequence format] [-h]

DESCRIPTION

This script will convert a protein alignment back into a cDNA. Loosely based on Bill
Pearson's mrtrans.

The options are:

-o filename - the output filename [default STDOUT]
-of format - output sequence format
(multiple sequence alignment)
[default phylip]
-i filename - the input filename [required]
-if format - input sequence format
(multiple sequence alignment)
[ default clustalw]
-s --seqdb filename - the cDNA sequence database file
-sf --seqformat - the cDNA seq db format (flatfile sequence format)
-h - this help menu

Use bp_mrtransp online using onworks.net services