This is the command kmc_tools that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
kmc_tools - additional operations on k-mer databases
SYNOPSIS
kmc_tools [global parameters] <operation> [operation parameters]
DESCRIPTION
This command and its various subcomments implement a number of operations on KMC
databases.
k-mers sets operations for 2 KMC databases
intersect
intersection of 2 k-mers sets
kmers_subtract
subtraction of 2 k-mers sets
counters_subtract
counters subtraction of 2 k-mer sets
union
union of 2 k-mers sets
operations for single kmc database
sort
sorts k-mers from database generated by KMC2.x
reduce
exclude too rare and too frequent k-mers
compact
remove counters (store only k-mers)
histogram
histogram of k-mers occurr ences
dump
dump k-mers and counters to text file
more complex operations:
complex
complex operations with a number of input databases
other operations:
filter
filter out reads with too small number of k-mers
OPTIONS
global parameters:
-t<value>
total number of threads (default: no. of CPU cores)
-v
enable verbose mode (shows some information) (default: false)
-hp
hide percentage progress (default: false)
EXAMPLE
kmc_tools union db1 -ci3 db2 -ci5 -cx300 db1_union_db2 -ci10
Use kmc_tools online using onworks.net services
