This is the command pepwheele that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
pepwheel - Draw a helical wheel diagram for a protein sequence
SYNOPSIS
pepwheel -sequence sequence -wheel boolean [-steps integer] [-turns integer] -graph graph
-amphipathic toggle -squares string -diamonds string -octags string
pepwheel -help
DESCRIPTION
pepwheel is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Display,Protein:2D Structure" command group(s).
OPTIONS
Input section
-sequence sequence
Output section
-wheel boolean
Default value: Y
-steps integer
The number of residues plotted per turn is this value divided by the 'turns' value.
Default value: 18
-turns integer
The number of residues plotted per turn is the 'steps' value divided by this value.
Default value: 5
-graph graph
Markup section
-amphipathic toggle
If this is true then the residues ACFGILMVWY are marked as squares and all other
residues are unmarked. This overrides any other markup that you may have specified
using the qualifiers '-squares', '-diamonds' and '-octags'.
-squares string
By default the aliphatic residues ILVM are marked with squares. Default value: ILVM
-diamonds string
By default the residues DENQST are marked with diamonds. Default value: DENQST
-octags string
By default the positively charged residues HKR are marked with octagons. Default
value: HKR
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