This is the Linux app named multipsq whose latest release can be downloaded as multiPSQ_1.1.0_windows_x86.zip. It can be run online in the free hosting provider OnWorks for workstations.
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multipsq
DESCRIPTION
A software for the classification of organisms based on results from multiplex pyrosequencing algorithms performed on the Pyro-Mark ID System (Qiagen). The assays can be designed using the software mpsqed available from https://sourceforge.net/projects/mpsqed/
Pyrosequencing can be applied for Single-Nucleotide-Polymorphism (SNP)-based pathogen typing or for providing sequence information of short DNA stretches. However, for some pathogens molecular typing cannot be performed relying on a single SNP or short sequence stretch, necessitating the consideration of several genomic regions. A promising rapid approach is the simultaneous application of multiple sequencing primers, called multiplex pyrosequencing. These primers generate a fingerprint-pyrogram which is constituted by the sum of all individual pyrograms originating from each primer used. MultiPSQ allows the analysis and classification of multiplex-pyrograms originating from various pyrosequencing primers.
Audience
Science/Research
User interface
Qt
Programming Language
C++
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/multipsq/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.