This is the Linux app named RASPnmr to run in Linux online whose latest release can be downloaded as RASP-0.1.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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RASPnmr to run in Linux online
DESCRIPTION:
RASP uses structure-based chemical shift predictions to solve the backbone resonance assignment problem in protein NMR spectroscopy. This enables rapid determination of highly accurate assignments on the basis of minimal experimental datasets, even for spectroscopically challenging proteins.RASP takes as input spin systems assembled on the basis of an arbitrary set of conventional triple-resonance NMR experiments. Uniquely, RASP is capable of extensive assignments even in the abscence of Cbeta chemical shift information: over a test set of 154 proteins RASP assigns 88 % of residues with an accuracy of 99.7 %, using only information available from HNCO and HNCA spectra.
RASP is described here:
MacRaild and Norton (2014) RASP: Rapid and robust backbone chemical shift assignments from protein structure. J Biomol NMR doi:10.1007/s10858-014-9813-7
Audience
Science/Research, Advanced End Users
User interface
Command-line
Programming Language
Python
This is an application that can also be fetched from https://sourceforge.net/projects/raspnmr/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.