This is the Linux app named 123NGS whose latest release can be downloaded as 123Fastq_v1.1.rar. It can be run online in the free hosting provider OnWorks for workstations.
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SCREENSHOTS
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123NGS
DESCRIPTION
123Fastq, as the first member of 123NGS family, performs all the pre-processes around next-generation sequencing reads (FASTQ files) easier than ever in the field of open source tools.Download quick user manual:
http://bit.ly/36uoA2C
This work has been done under the supervision of
Dr.Javad Zahiri, Bioinformatics and Computational Omics Lab (BioCOOL)
and
Dr.Masoud Garshasbi, Department of Medical Genetics, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran.
Features
- Next generation sequencing reads quality check
- Quality check of paired-end reads
- Flexible trimmer
- Trim recommendations based on quality check results
- Adapter decontamination by two approaches
- Fast5 to FASTQ conversion
- SAM/BAM to FASTQ conversion
- Demultiplexing FASTQ reads
- Cross platform (unix, windows)
- Written in java
User interface
Java Swing
Programming Language
Java
This is an application that can also be fetched from https://sourceforge.net/projects/project-123ngs/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
