This is the Linux app named 123VCF whose latest release can be downloaded as 123VCF_binary.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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SCREENSHOTS:
123VCF
DESCRIPTION:
123VCF has been developed to make the filtration step of VCF files more reliable and efficient.
It can be used in the most important step of whole exome sequencing and whole genome sequencing data analysis in the research and also clinical settings.
It just gets the filtration order file and variant file and then, it filters variants based on what you ordered through the filtration order file.
User manual:
https://dl.adbioinformatics.net/123VCF/123VCF_Manual.ver1.pdf
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Authors: Milad Eidi, Samaneh Abdolalizadeh, Soheila Moeini
Supervisors: Javad Zahiri, PhD - Masoud Garshasbi, PhD
Features
- Graphical user interface
- Easy-to use
- Easy-to-understand
- Compressed or non-compressed VCF files as input
- Survived variants present in VCF format, Tab-separated format
- 123VCF puts the same BED feature variants when the user defines a BED filter next to each other in a TSV file to detect possible compound heterozygous variants
Audience
Education, Advanced End Users, End Users/Desktop, Testers
User interface
Java Swing
Programming Language
Java
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/project123vcf/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.