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Auto Primer3 download for Linux

Free download Auto Primer3 Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named Auto Primer3 whose latest release can be downloaded as AutoPrimer3-3.0.2_installer.exe. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named Auto Primer3 with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

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Auto Primer3


DESCRIPTION

PLEASE NOTE: THIS PROJECT PAGE WILL NO LONGER BE UPDATED - PLEASE USE THE GITHUB PAGE (https://github.com/gantzgraf/autoprimer3) TO FIND THE LATEST RELEASE (https://github.com/gantzgraf/autoprimer3/releases/latest).


AutoPrimer3 retrieves gene information, DNA sequences and SNP information from the UCSC genome browser and uses primer3 to automatically design primers to genes or genomic coordinate targets.

Primers may be designed using information from any of the UCSC hosted genomes and primers can be made to avoid overlapping SNPs for genomes where SNP databases are available.



Features

  • Automatic design of primers to genes, transcripts or genomic coordinates
  • Upload BED or VCF files and design primers to specified coordiantes
  • Export primer output to .txt, .csv or .xlsx files
  • Automatically avoid designing primers on top of known SNPs
  • Automatically check in-silico PCR results for designed pairs


Audience

Science/Research


User interface

JavaFX


Programming Language

Java


Categories

Scientific/Engineering

This is an application that can also be fetched from https://sourceforge.net/projects/autoprimer3/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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