This is the Linux app named BioCompUP Align whose latest release can be downloaded as AlignDocumentation.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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BioCompUP Align
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DESCRIPTION
C++ library for protein sequence profile to profile alignment. Implementing numerous known alignment variants in a flexible and manageable architecture.
Features
- Make sequence to sequence alignment
- Make profile to sequence alignment
- Make profile to profile alignment
- Use three different weighting schemes in the construction of profiles
- Use eleven different scoring functions used in alignments against profile Profile
- Use structural information of various kinds
- Use of penalty functions for linear gap
- Perform global, local and semi-global alignments
Audience
Science/Research
User interface
Console/Terminal
Programming Language
C++
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/biocompupalign/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
