This is the Linux app named BioCompUP Align to run in Linux online whose latest release can be downloaded as AlignDocumentation.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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BioCompUP Align to run in Linux online
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DESCRIPTION
C++ library for protein sequence profile to profile alignment. Implementing numerous known alignment variants in a flexible and manageable architecture.Features
- Make sequence to sequence alignment
- Make profile to sequence alignment
- Make profile to profile alignment
- Use three different weighting schemes in the construction of profiles
- Use eleven different scoring functions used in alignments against profile Profile
- Use structural information of various kinds
- Use of penalty functions for linear gap
- Perform global, local and semi-global alignments
Audience
Science/Research
User interface
Console/Terminal
Programming Language
C++
This is an application that can also be fetched from https://sourceforge.net/projects/biocompupalign/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
