This is the Linux app named CellTypist whose latest release can be downloaded as celltypist1.6.1.zip. It can be run online in the free hosting provider OnWorks for workstations.
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SCREENSHOTS:
CellTypist
DESCRIPTION:
CellTypist is an automated tool for cell type classification, harmonization, and integration. Classification, transfer cell type labels from the reference to query dataset. Harmonization, match and harmonize cell types defined by independent datasets. integration, integrate cell and cell types with supervision from harmonization. CellTypist recapitulates cell type structure and biology of independent datasets. Regularised linear models with Stochastic Gradient Descent provide a fast and accurate prediction. Scalable and flexible. Python-based implementation is easy to integrate into existing pipelines. A community-driven encyclopedia for cell types.
Features
- Use in the Python environment
- Supplemental guidance
- Inspection of the harmonization result
- Cross-dataset cell type harmonization
- Integrate cell and cell types with supervision from harmonization
- Transfer cell type labels from the reference to query dataset
Programming Language
Python
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/celltypist.mirror/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.