This is the Linux app named CollagenFinder whose latest release can be downloaded as CollagenFinder.zip. It can be run online in the free hosting provider OnWorks for workstations.
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CollagenFinder
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DESCRIPTION
CollagenFinder (CF) is a software tool for searching CLP sequences in the given nucleotide sequence. CF scans nucleotide sequence in all six possible reading frames. The additional filter procedures provide more accurate CLP prediction:
- detecting for a tryptophan residue and stop-codons and removing corresponding CLPs,
- cutoff value by GXY repeat number. If we need CLP with length 36 and more we should use cutoff value equal to 4.
User interface
Command-line
Programming Language
Perl
Database Environment
Perl DBI/DBD
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/collagenfinder/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
