This is the Linux app named CollagenFinder whose latest release can be downloaded as CollagenFinder.zip. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named CollagenFinder with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 3. Upload this application in such filemanager.
- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.
- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application, install it and run it.
CollagenFinder
DESCRIPTION:
CollagenFinder (CF) is a software tool for searching CLP sequences in the given nucleotide sequence. CF scans nucleotide sequence in all six possible reading frames. The additional filter procedures provide more accurate CLP prediction:
- detecting for a tryptophan residue and stop-codons and removing corresponding CLPs,
- cutoff value by GXY repeat number. If we need CLP with length 36 and more we should use cutoff value equal to 4.
User interface
Command-line
Programming Language
Perl
Database Environment
Perl DBI/DBD
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/collagenfinder/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.