This is the Linux app named COV2HTML to run in Linux online whose latest release can be downloaded as map2cov_4.4_SRC.zip. It can be run online in the free hosting provider OnWorks for workstations.
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SCREENSHOTS:
COV2HTML to run in Linux online
DESCRIPTION:
COV2HTML provides an easy and 'in home' web interface for biologists that allows coverage visualization of the NGS alignment needed for the analysis. It combines two essential processes: (i) MAP2COV, a tool that converts the huge NGS mapping or coverage files into light specific coverage files which contains genetic elements informations. (ii) COV2HTML, a visualization interface allowing a real-time analysis of data with selected criteria. Thus this interface offers a visualization of NGS mapping coverage data (DNA-seq, RNA-seq, ChIP-seq and TSS) performed in different prokaryotic organisms (bacteria, viruses...) or different experimental conditions (mutant versus wild type strains or different growth states…) facilitating studies.Features
- RNA-Seq strand coverage visualization : Black (strand +), Purple (strand -)
- ncRNA feature analysis
- X and Y Zooms are supported
- Security enhanced: HTTPS as default
Audience
Science/Research
User interface
Project is a user interface (UI) system, Tk
Programming Language
Python, PHP
Database Environment
MySQL
This is an application that can also be fetched from https://sourceforge.net/projects/cov2html/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.