This is the Linux app named CoVEC whose latest release can be downloaded as covec_distribution-v0.4.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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CoVEC
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DESCRIPTION
The package provides SVM models to be used with SVMlight (http://svmlight.joachims.org/) for drawing a consensus out of individual 3rd-party predictions about the effect of mutations. The 3rd party tools are SIFT, Polyphen2, SNPs&GO and Mutation Assessor.
The package also provides a series of Perl modules and scripts to assist in the preparation of data. The modules can be used to build custom tools and pipelines, whereas the scripts provide basic executable implementations based on the modules.
SVMlight, SIFT, Polyphen2, SNPs&GO and Mutation Assessor are the property of their respective authors and institutions and are not distributed in this package.
Audience
Healthcare Industry, Science/Research, Developers
User interface
Console/Terminal, Command-line
Programming Language
Perl
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/covec/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
