This is the Linux app named CpDB whose latest release can be downloaded as CpDB.20150623.static.zip. It can be run online in the free hosting provider OnWorks for workstations.
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CpDB
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DESCRIPTION
This software allows us to create a relational database in Postgres to host full bacterial genomes. Besides the database, also there are software tools, like a parser, to convert EMBL or GBK files to the CpDB relational schema. Once in the CpDB, one can extract unlimited reports from a bacterial genome using SQL. This software is part of the Ph.D. in Bioinformatics from Anderson Santos and was developed under the Corynebacterium pseudotuberculosis (Cp) pangenome project. The Cp pangenome delivered to the scientific community 15 bacterial strains deposited at the GenBank database, between the years of 2009 and 2012. The full thesis was written in Portuguese-br. A book chapter explaining in English why and what for this software is available from the address: http://www.intechopen.com/articles/show/title/whole-genome-annotation-in-silico-analysis. CpDB also was the backbone for the Pannotator tool: http://pannotator.facom.ufu.br
Enjoy it.
Audience
Science/Research
Programming Language
C, PL/SQL
Database Environment
PostgreSQL (pgsql)
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/cpdb/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
