This is the Linux app named denovo_solid_pipeline to run in Linux online whose latest release can be downloaded as denovo_solid_pipeline_1.0.1.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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denovo_solid_pipeline to run in Linux online
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DESCRIPTION
denovo_solid_pipeline (DSP) is a semi automated pipeline for short genome assembly using SOLiD sequencing data. The main features of the pipeline are the optimization of the number of read-correction runs and computational resources via dynamic programming. DSP also has the advantage over the currently available pipeline (denovo2) of generating more contigs suitable for further assembly steps, increasing the chances of detecting sequencing errors and/or polymorphic sites.Audience
Science/Research
User interface
Console/Terminal
Programming Language
Unix Shell
This is an application that can also be fetched from https://sourceforge.net/projects/denovosolid/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
