This is the Linux app named DeNovoCheck to run in Linux online whose latest release can be downloaded as DeNovoCheck_270113.zip. It can be run online in the free hosting provider OnWorks for workstations.
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SCREENSHOTS:
DeNovoCheck to run in Linux online
DESCRIPTION:
DeNovoCheck is intended to be used for inheritance analysis in NGS tio data. For rare dominant Mendelian diseases, patient-parent trios are often used to reduce the number of candidate variants. The algorithm bases the inheritance prediction on the data available in the parental BAM files and allows for a fast and reliable selection of potential de novo variants.Features
- Identify de novo variants in NGS trio data
- Command line parameters
- Properties file configuration
Audience
Science/Research
User interface
Command-line
Programming Language
Java
This is an application that can also be fetched from https://sourceforge.net/projects/denovocheck/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.